Lemma 48.31.1. Let $f : X \to Y$ be a proper morphism of Noetherian schemes. Let $V \subset Y$ be an open subscheme and set $U = f^{-1}(V)$. Picture
\[ \xymatrix{ U \ar[r]_ j \ar[d]_ g & X \ar[d]^ f \\ V \ar[r]^{j'} & Y } \]
Then we have a canonical isomorphism $Rj'_! \circ Rg_* \to Rf_* \circ Rj_!$ of functors $D^ b_{\textit{Coh}}(\mathcal{O}_ U) \to \text{Pro-}D^ b_{\textit{Coh}}(\mathcal{O}_ Y)$ where $Rj_!$ and $Rj'_!$ are as in Remark 48.30.5.
First proof.
Let $K$ be an object of $D^ b_{\textit{Coh}}(\mathcal{O}_ U)$. Let $(K_ n)$ be a Deligne system for $U \to X$ whose restriction to $U$ is constant with value $K$. Of course this means that $(K_ n)$ represents $Rj_!K$ in $\text{Pro-}D^ b_{\textit{Coh}}(\mathcal{O}_ X)$. Observe that both $Rj'_!Rg_*K$ and $Rf_*Rj_!K$ restrict to the constant pro-object with value $Rg_*K$ on $V$. This is immediate for the first one and for the second one it follows from the fact that $(Rf_*K_ n)|_ V = Rg_*(K_ n|_ U) = Rg_*K$. By the uniqueness of Deligne systems in Lemma 48.30.3 it suffices to show that $(Rf_*K_ n)$ is pro-isomorphic to a Deligne system. The lemma referenced will also show that the isomorphism we obtain is functorial.
Proof that $(Rf_*K_ n)$ is pro-isomorphic to a Deligne system. First, we observe that the question is independent of the choice of the Deligne system $(K_ n)$ corresponding to $K$ (by the aforementioned uniqueness). By Lemmas 48.30.4 and 48.30.7 if we have a distinguished triangle
\[ K \to L \to M \to K[1] \]
in $D^ b_{\textit{Coh}}(\mathcal{O}_ U)$ and the result holds for $K$ and $M$, then the result holds for $L$. Using the distinguished triangles of canonical truncations (Derived Categories, Remark 13.12.4) we reduce to the problem studied in the next paragraph.
Let $\mathcal{F}$ be a coherent $\mathcal{O}_ X$-module. Let $\mathcal{J} \subset \mathcal{O}_ Y$ be a quasi-coherent sheaf of ideals cutting out $Y \setminus V$. Denote $\mathcal{J}^ n\mathcal{F}$ the image of $f^*\mathcal{J}^ n \otimes \mathcal{F} \to \mathcal{F}$. We have to show that $(Rf_*(\mathcal{J}^ n\mathcal{F}))$ is a Deligne system. By Lemma 48.30.10 the question is local on $Y$. Thus we may assume $Y = \mathop{\mathrm{Spec}}(A)$ is affine and $\mathcal{J}$ corresponds to an ideal $I \subset A$. By Lemma 48.30.9 it suffices to show that the inverse system of cohomology modules $(H^ p(X, I^ n\mathcal{F}))$ is pro-isomorphic to the inverse system $(I^ n M)$ for some finite $A$-module $M$. This is shown in Cohomology of Schemes, Lemma 30.20.3.
$\square$
Second proof.
Let $K$ be an object of $D^ b_{\textit{Coh}}(\mathcal{O}_ U)$. Let $L$ be an object of $D^ b_{\textit{Coh}}(\mathcal{O}_ Y)$. We will construct a bijection
\[ \mathop{\mathrm{Hom}}\nolimits _{\text{Pro-}D^ b_{\textit{Coh}}(\mathcal{O}_ Y)}(Rj'_!Rg_*K, L) \longrightarrow \mathop{\mathrm{Hom}}\nolimits _{\text{Pro-}D^ b_{\textit{Coh}}(\mathcal{O}_ Y)}(Rf_*Rj_!K, L) \]
functorial in $K$ and $L$. Fixing $K$ this will determine an isomorphism of pro-objects $Rf_*Rj_!K \to Rj'_!Rg_*K$ by Categories, Remark 4.22.7 and varying $K$ we obtain that this determines an isomorphism of functors. To actually produce the isomorphism we use the sequence of functorial equalities
\begin{align*} \mathop{\mathrm{Hom}}\nolimits _{\text{Pro-}D^ b_{\textit{Coh}}(\mathcal{O}_ Y)}(Rj'_!Rg_*K, L) & = \mathop{\mathrm{Hom}}\nolimits _ V(Rg_*K, L|_ V) \\ & = \mathop{\mathrm{Hom}}\nolimits _ U(K, g^!(L|_ V)) \\ & = \mathop{\mathrm{Hom}}\nolimits _ U(K, f^!L|_ U)) \\ & = \mathop{\mathrm{Hom}}\nolimits _{\text{Pro-}D^ b_{\textit{Coh}}(\mathcal{O}_ X)}(Rj_!K, f^!L) \\ & = \mathop{\mathrm{Hom}}\nolimits _{\text{Pro-}D^ b_{\textit{Coh}}(\mathcal{O}_ Y)}(Rf_*Rj_!K, L) \end{align*}
The first equality is true by Lemma 48.30.1. The second equality is true because $g$ is proper (as the base change of $f$ to $V$) and hence $g^!$ is the right adjoint of pushforward by construction, see Section 48.16. The third equality holds as $g^!(L|_ V) = f^!L|_ U$ by Lemma 48.17.2. Since $f^!L$ is in $D^+_{\textit{Coh}}(\mathcal{O}_ X)$ by Lemma 48.17.6 the fourth equality follows from Lemma 48.30.2. The fifth equality holds again because $f^!$ is the right adjoint to $Rf_*$ as $f$ is proper.
$\square$
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